Metabolic Diversity within the Globally Abundant Marine Group II Euryarchaea Drives Ecological Patterns

Supplemental Data accompanying manuscript analyzing 322 thalassoarchaeal genomes. Includes FASTA files of genomic contigs, proteins, and duplicate genomes.<br>Supplemental Data 1. FASTA format of the 16 ribosomal marker proteins for all Thalassoarchaea genomes.Supplemental Data 2. Newick file of the phylogenomic tree generated using 16 concatenated ribosomal marker proteins for all Thalassoarchaea genomes. Corresponds to Supplemental Figure 1.Supplemental Data 3. Newick file of the phylogenomic tree generated using 16 concatenated ribosomal marker proteins for the non-redundant set of Thalassoarchaea genomes. Corresponds to Figure 1.Supplemental Data 4. Spreadsheet of the pairwise amino acid identity values.Supplemental Data 5. FASTA format of the 16S rRNA gene sequences present in the Thalassoarchaea genomes.Supplemental Data 6. Newick file of the phylogenetic tree generated using the 16S rRNA gene sequences present in the Thalassoarchaea genomes. Corresponds to Supplemental Figure 3.Supplemental Data 7. Pfam HMMs used to identify MEROPS peptidases. The link between Pfams and MEROPS can be found in Supplemental Table 3.Supplemental Data 8. FASTA format of the putative proteorhodopsin sequences identified in the Thalassoarchaea genomes.Supplemental Data 9. Newick file of the phylogenetic tree generated using the proteorhodopsin sequences present in the Thalassoarchaea genomes. Corresponds to Supplemental Figure 5.Supplemental Data 10. GenBank files gathered from NCBI for the putative archaeal flagellum operon for Tully et al. (2018) genomes.Supplemental Data 11. Raw read counts for all thalassoarchaeal contigs generated from Tara Oceans and Ocean Sampling Day samples.Supplemental Data 12. Derived relative fraction and RPKM values for all Thalassoarchaea genomes for all Tara Oceans and Ocean Sampling Day samples. Corresponds to Figure 5 and Supplemental Figure 6.