All public SARS-CoV-2 INSDC raw read data is systematically analysed to produce a set of uniform variant calls (VCF format) and consensus sequences, using the COVID Sequence Analysis Workflow and the
Consensus alignment generated by removing nucleotide positions for which the alignment differed when comparing three alignments generated via ClustalX (with gap costs of 10, 15, and 20).
Consensus sequences generated by CONCOMPRA, NGSpeciesID, and amplicon_sorter from (1) a synthetic bacterial community composed of 20 equally abundant bacteria (16S MOCK; https://www.atcc.org/products/
