Additional file 6 of Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale

Additional file 6. Table S8. Coding sequences with RNA sequencing read counts and fold-change between time points in the neighboring 10 kb around the five IS614 integration loci in B. caccae estimated to have large-scale ancestral strain shifts. Gene annotations were obtained using Prokka. The target gene downstream of the putative promoter as well as the upstream gene are highlighted (green: downstream, red: upstream).