Crayfish DNA Barcoding analyses
收藏DataCite Commons2024-03-04 更新2024-08-18 收录
下载链接：
https://figshare.com/articles/dataset/Crayfish_DNA_Barcoding_analyses/23556087
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资源简介：
#Crayfish DNA Barcoding analyses#
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OTU_547bp_allOTUhaplotypes_alignment_withoutgroups.nex: NEXUS file with samples representing all unique 547bp haplotypes with mrbayes and partition finder block.
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OTU_547bp_1seqperOTU_withoutgroups.nex: NEXUS file with one 547bp sequence per OTU haplogroup with mrbayes and partition finder block.
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mb_Unique_sequence_alignment_fulllengthonly_withOG.nex: NEXUS file used to delimit OTUs with mrbayes, with samples representing 622bp haplotypes with mrbayes and partition finder block.
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RelClock_Coal.xml: Beauti file for beast relaxed clock coalescent prior analysis, using 622bp haplotypes.
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gmyc_rel_coal_tree.pdf: Output tree from GMYC analysis specifying OTU delimitations (see Howeth_etal_raw_haplotype_by_crayfish.txt).
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RelClock_Coal_consensus_noannotation.tree: Tree ouput from BEAST used for GMYC analysis (no annotations).
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bptp_mb_Unique_sequence_alignment_fulllengthonly_withOG.txt: bPTP output delineating samples into OTUs (622bp mrbayes analysis, see Howeth_etal_raw_haplotype_by_crayfish.txt).
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bptp_mb_Unique_sequence_alignment_fulllengthonly_withOG.svg: Graphical bPTP output tree showing delineation of samples into OTUs (622bp mrbayes analysis, see Howeth_etal_raw_haplotype_by_crayfish.txt).
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mrbayes_CF_unique_3part_unannotated.nex: Consensus tree produced from mrbayes used for bPTP analyses.
提供机构：
figshare
创建时间：
2023-07-12
