SUPER-FOCUS databases for mmseqs2

NIAID Data Ecosystem2026-05-01 收录

微生物功能注释

数据链接：

https://figshare.com/articles/dataset/SUPER-FOCUS_databases_for_mmseqs2/25009751 数据链接链接失效反馈

官方服务：

资源简介：

MMSeqs2 databases for use with SUPER-FOCUS These databases are for use with mmseqs2

创建时间：

2024-01-17

Human Gut Microbiome Reference Set

微生物组

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Zipped fasta file of the 3594 species representatives. Zipped csv file of genetic annotations of that fasta (too large for excel). Csv & xlsx files of antibiotics resistances of the fasta. Csv &am

Figshare2022-06-14 更新90

Proteome database of Pseudomonas fragi strain F1794

微生物蛋白质组学

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Pseudomonas fragi is a Gram-negative bacterium common in soil and water. This work presents the proteome database of P. fragi strain F1794 by parsing its annotated proteome downloaded from UniProt. Co

NIAID Data Ecosystem50

Vulnificus_Clade_ Prokka_output_gff.zip

弧菌基因组学

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Prokka genome annotations used in the analysis of the Vulnificus clade: Vibrio navarrensis, Vibrio vulnificus, and Vibrio cidicii .

DataCite Commons2025-06-09 更新40

Supplementary File S3

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海洋共生微生物

Supplementary File S3. KEGG annotations of sponge-associated microbes. The table matrix represents the number of assigned KOs (KEGG), (total number of unique 5306 Kos) in 402 MAGs.

Figshare2021-12-03 更新80

Additional file 2 of Anthropogenic activities mediate stratification and stability of microbial communities in freshwater sediments

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沉积物生物地球化学

Additional file 2: Table S12. Fermentation-related functional annotation of prokaryotic taxa based on FAPROTAX.

Figshare2023-08-26 更新50