OzWheat v1.0 datasets

Genomic/transcriptome/pedigree and marker-trait association data for the CSIRO OzWheat v1.0 Rapid Gene Identification RShiny tool and associated with the following publication; Hyles, J., Eagles, H., et al. (2024). OzWheat; a genome-to-phenome platform to resolve complex traits for wheat pre-breeding and research. \nLineage: Pedigree curation as described in Hyles et al. 2024.\n\nGenomic SNPs from Illumina 90K Infinium iSelect Array as described in Hyles et al. 2024 and Transcriptome SNPs and quantitative expression matrix as described in Dillon et al. 2024.\n\nSNP Haplotype file combining 90K and transcriptome SNPs generated after removal of missing or poor-quality data (genotypes with >50% missing data removed, SNPs with >20% missing data removed). Monomorphic markers and those with a minor allele frequency less than 5% were also removed. File sorted by physical chromosome position of SNP in IWGSC Chinese Spring Ref Seq v1.0. \n\n90K data was generated in collaboration with AgVic under the GRDC DAV00127 project, and through OD-105738, OD-107742 and OD-209560. \n\nTranscript SNPs were generated in CSIRO strategic investment projects OD-107742 and OD-211556.\n\nMarker:trait associations were developed in project OD-220968 from phenotypic data collected in OD-107742, OD-211556, and University of Sydney PhD research project.\n\nRShiny application was developed in Scientific Research Collaboration projects; ERRFP-1147, ERRFP-1380 .