NIST NA12878/HG001 0.1X read downsample
收藏资源简介:
Downsampled 0.1x coverage BAM alignment file derived from the RMNISTHS_30xdownsample.bam (link), which itself is a downsampling of the Genome in a Bottle (GIAB) NIST NA12878/HG001 human reference sample. RMNISTHS_30xdownsample.bam was downsampled using the following: wget -c https://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/NA12878/NIST_NA12878_HG001_HiSeq_300x/RMNISTHS_30xdownsample.bam wget -c https://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/NA12878/NIST_NA12878_HG001_HiSeq_300x/RMNISTHS_30xdownsample.bam.bai samtools view -s 0.003 -b RMNISTHS_30xdownsample.bam > RMNISTHS_0_point_1xdownsample.bam samtools index RMNISTHS_0_point_1xdownsample.bam Dataset consists of one hg19 aligned BAM file at 0.1-0.2X and one matching BAM index file



