TGowler Resources

The dataset presents input/output data for the TGOWLeR framework. TGOWLeR abstracts general patterns from workflow sequences previously extracted from texts. It comprises two modules –a workflow extractor and a pattern miner– both relying on a specific domain ontology.The <em>input</em> of the first module is an RDF/ZIPPED ontology (tgowler_resource_ontologies_PHAGE_1.0.rdf.zip) and a set of un-annotated articles (<em>e.g.</em>, datastore_2018_2019.zip). The proposed pipeline (implemented in GATE 8.1) will <em>produce</em> annotated texts (<em>e.g.</em>, annotated_2018_2019.zip) and their corresponding workflows (<em>e.g.</em>, WFMiner_WF_2018_2019.xml).The <em>input</em> of the second module is the serialized ontology ... PubMed published articles from 2018-01-01 to 2019-10-01