EGP Mitochondrial Genome Analysis on 1000 Genomes Project 698 Related Whole-Genome Sequencing Data

Summary: This dataset consists of running EGP version 1.3 on whole-genome sequencing data from the 1000 Genomes Project 698 Related Dataset. The link to EGP is here https://github.com/tycheleturner/ElGenomaPequeno.

Author: Tychele N. Turner, Ph.D.

Short Writeup: EGP version 1.3 on 1000 Genomes Project 698 Related Dataset: Short-read WGS CRAM files were downloaded through the paths present in this file https://ftp-trace.ncbi.nlm.nih.gov/1000genomes/ftp/1000G_2504_high_coverage/additional_698_related/1000G_698_related_high_coverage.sequence.index. The results are shown below:

Public Dataset
EGP Result File Type
MD5

1000 Genomes Project 698 Related
Mitochondrial Genome Fasta Files for MEGA
322038d61b4da2e937b32410613c3532

1000 Genomes Project 698 Related
Mitochondrial Genome MitoMaster Result File
36c782c12245100478903f7fa191a402

1000 Genomes Project 698 Related
Mitochondrial Genome Variant Tables
68b2a51361ffae4e7ad9d420b8becd38

1000 Genomes Project 698 Related
Mitochondrial Genome Copy Number
1e83c8ae132b0a7ef33b090757b29063

Please note: I have found that with Zenodo you must use "Download All" for the copy number table to properly open.