Additional file 2 of Resequencing of global Tartary buckwheat accessions reveals multiple domestication events and key loci associated with agronomic traits

Additional file 2: Table S1. Summary of all accessions sequenced in this study. Table S2. Distribution of SNPs within various genomic regions in Tartary buckwheat. Table S3. Distribution of indels within various genomic regions. Table S4. The validation of random selected SNPs by PCR methods. Table S5. Levels of genetic differentiation in different chromosomes. Table S6. 13 agronomic and quality traits used in GWAS. Table S7. Putative regions and genes experiencing domestication sweep between HW and SL. Table S8. Putative regions and genes experiencing domestication sweep between HW and NL. Table S9. Putative regions and genes experiencing domestication sweep between HW and SL calculated by DCMS. Table S10. Putative regions and genes experiencing domestication sweep between HW and NL calculated by DCMS. Table S11. Putative regions and genes experiencing differentiation sweep between SL and NL. Table S12. Putative regions and genes experiencing domestication sweep between HW and SL. Table S13. Putative regions and genes experiencing domestication sweep between HW and NL. Table S14. Regions identified by Fst approaches overlapped with the SL or NL unique selective sweep regions. Table S15. Overlaps between domesticated regions and GWAS signals for all traits. Table S16. Overlaps between domesticated regions and GWAS signals for all traits calculated by DCMS. Table S17. Overlaps between differentiated regions and GWAS signals for all traits. Table S18. SNP analysis associated with Ft1:4617722 for kaempferol-3-O-rutinoside content (-logP > 5). Table S19. Identification of candidate genes associated with Ft1:4617722 on Chr.1 for kaempferol-3-O-rutinoside content. Table S20. Information of the candidate genes from GWAS analysis. Table S21. Total SNPs for GWAS on 1000-gain-weight (-logP > 5). Table S22. Identification of candidate genes associated with Ft4:46350596 on Chr.4 for 1000-gain-weight. Table S23. The information of FtPinG0404616900 potential target genes from GWAS on 1000-gain-weight. Table S24. Primers used in this study.