fMRI data acquired during spontaneous behavior in head-fixed rats with MB-SWIFT sequence

This data package includes data obtained from 10 rats, and each subject has their own folder. Each folder contains sub-folders of 1-3 task-free resting-state scans (BL0, BL1, and/or BL2). Additionally, the "Odor" folder includes the banana odor stimuli data. Each sub-folder contains the reconstructed and unprocessed fMRI file (swift.nii), unprocessed T2-weighted anatomical image (T2.nii), and fully processed fMRI data (s_pr_sc_c_rrr_swift.nii). The preprocessing included motion correction, co-registration, removal of volumes with clear motion and subsequent interpolation, regression of non-biological signals, and spatial smoothing. Two scripts are also provided: makefile and mot_corr.sh - where the makefile script runs the preprosessing steps from swift.nii to smoothed and co-registered swift dataset apart from motion correction. The motion correction step is performed by the mot_corr.sh shell script.