Processed RNA-seq counts, annotations, and differential expression results for Cleistocalyx operculatus and Syzygium cumini under water stress and recovery

This dataset provides processed RNA-seq results for Cleistocalyx operculatus and Syzygium cumini subjected to control, waterlogging, drought, and recovery treatments. A total of 24 leaf RNA-seq libraries were sequenced on the Illumina NovaSeq 6000 platform (PE150), generating 327.55 Gb of clean data with >91.5% bases achieving Q30 quality. De novo assembly with Trinity (r20131110) yielded 99,961 unigenes (N50 = 2,602 bp), of which 71,968 were functionally annotated across GO and KEGG databases. The uploaded ZIP archive contains three Excel files: (i) All_Expressed_Genes.xlsx (gene counts and FPKM values across treatments), (ii) All_Database_Annotation.xlsx (functional, GO, and KEGG annotations across seven sheets), and (iii) DEGs_with_FPKM.xlsx (differentially expressed genes with log2FC, adjusted p-values, and FPKM values). Due to institutional restrictions, the raw FASTQ files are not publicly available. However, the processed datasets included here are sufficient to reproduce the statistical analyses and interpretations presented in the associated manuscript. Raw FASTQ files may be requested from the corresponding author, subject to institutional approval.