Metagenomic Analyses Raw Sequence Data of Control Experiments from Enriched Nitrifying Culture

INVESTIGATION

ONTOLOGY SOURCE REFERENCE

Term Source Name
ENVO

Term Source File
http://purl.obolibrary.org/obo/ENVO_00002046

Term Source Description
The Environment Onthology

STUDY

Study Identifier
Control_1

Study Title
Control reactor experiments

Study Description
Determination of Control reactor nitrification kinetics, microbial abundance, and functioanl characteristics

STUDY DESIGN DESCRIPTORS

Study Design Type
aerobic bioreactor

Study Design Type Term Accession Number
http://purl.obolibrary.org/obo/ENVO_00002126

Study Design Type Term Source REF
ENVO

STUDY FACTORS

Study Factor Name
oxygen, ammonia, nitrite

Study Factor Type
chemical compound

Study Factor Type Term Accession Number
http://purl.obolibrary.org/obo/OMIT_0011105

Study Factor Type Term Source REF
OMIT

Raw data for Metagenom sequencing of Control 1 experiment.

ASSAY

Sample Name
Control_1

Protocol REF
nucleic acid extraction

Extract Name
Control_1

Protocol REF
library construction

Library layout (PV)
Pair-end

Target gene
16S rRNA

Protocol REF
nucleic acid sequencing

Sequencing instrument
Illumina NovaSeq X Plus platform

Assay Name
Control 1

Raw Data File
Control1.1, Control1.2

Protocol REF
sequence analysis data transformation

Raw data for Metagenom sequencing of Control 2 experiment.

Sample Name
Control_2

Protocol REF
nucleic acid extraction

Extract Name
Control_2

Protocol REF
library construction

Library layout (PV)
Pair-end

Target gene
16S rRNA

Protocol REF
nucleic acid sequencing

Sequencing instrument
Illumina NovaSeq X Plus platform

Assay Name
Control 2

Raw Data File
Control2.1, Control2.2

Protocol REF
sequence analysis data transformation