Temporal multi-omics dataset of a cucurbit–powdery mildew interaction

This repo contains processed transcriptomics and metabolomics datasets and associated metadata generated for the study "Temporal multi-omics dataset of a cucurbit–powdery mildew interaction" which investigates the interaction between Cucumis melo and the obligate biotrophic fungal pathogen Podosphaera xanthii across a 12–144 h post-inoculation time course. For transcriptomics, the repository includes gene-level count matrices and TPM-normalized expression matrices for C. melo and P. xanthii, sample metadata, functional annotations generated using eggNOG-mapper, differential expression results comparing inoculated and mock-treated melon plants and temporal differential expression analyses for P. xanthii. For metabolomics, the repository includes sample metadata, processed LC–MS/MS feature tables acquired in positive and negative electrospray ionization modes (ESI+ and ESI−), feature sets used for downstream analyses and tables of statistically significant metabolic features. Raw RNA-seq data are deposited in the NCBI Sequence Read Archive (SRA) under BioProject accession PRJNA1454108. Raw LC–MS/MS data and associated metabolomics information are deposited in the MetaboLights repository under study identifier MTBLS15447. Together, these files provide the processed data, metadata, functional annotations, and statistical outputs supporting the transcriptomic and metabolomic analyses presented in the associated study.