Phylogenomic trees of <i>Plethodon</i>

# Plethodon phylogenomic trees## IQ-Tree and wASTRAL### 'plethodon-cat.treefile'Concatenated IQ-Tree analysis of all 198 samples ### 'wASTRAL-plethodon.tree'Species tree from wASTRAL with samples assigned to species, phylogroups, or polyphyletic/paraphyletic units## Ultrametric trees### 'Plethodon-MCMCtree-10Ma.tre'Time-calibrated MCMCtree "Figtree" output tree. Includes 95% HPD. *Branch lengths are in units of 10 Ma!Since this file is not readily usable for in most programs for comparative analyses, additional files were prepared below.### 'plethodon-unpruned.tree'Time-calibrated topology taken from 'Plethodon_MCMCtree_10Ma.tre', but with branch units converted to 1 Ma (no HPD included). Can be easily imported into R or other software for comparative analyses.### 'plethodon-pruned.tree'Same tree as 'plethodon-unpruned.tree', but intraspecific groups (e.g. phylogroups or polyphyletic samples) were pruned so that each named species is represented by a single tip. <br>