A technical comparison of spatial transcriptomics platforms across six cancer types - Visium/VisiumCytAssist/VisiumHD

This repository contains spatial transcriptomics data generated with Visium in three modalities: Visium v1, Visium v2/CytAssist, and Visium HD. These data were used in the spatial platforms comparison study by Cervilla et al. (2025). If you are interested in the same samples profiled with other spatial transcriptomics technologies, see also: Xenium and CosMx: https://doi.org/10.5281/zenodo.17986017 XeniumMT and Xenium5K: https://doi.org/10.5281/zenodo.18000256