Simulation data for the fine-tuned low CTCF condition for supplementary figure 5 from the paper "Boundary stacking interactions enable cross-TAD enhancer-promoter communication during limb development

Zenodo2023-01-25 更新40

Molecular architecture of heterochromatin at the nuclear periphery of primary human cells - simulation data

染色质结构模拟

分子动力学

In this repository, we present all-atom molecular dynamics simulations of a 13 nucleosome system modelled from cryo-electron tomography data of a human cell nucleus. For more information, please consu

Zenodo2026-05-20 更新30

Liquid-liquid phase separation of lamin drives altered chromatin organisation in cardiomyopathic mutations of lamin A

染色质结构模拟

核纤层蛋白相互作用

# Coarse-Grained Chromatin–Lamin Simulation This repository describes the setup and simulation details for a coarse-grained model of chromatin and lamin interactions, inspired by experimental data

Figshare2025-06-06 更新40

Figure S1 - Preferentially Quantized Linker DNA Lengths in Saccharomyces cerevisiae

染色质结构模拟

核小体连接DNA分析

Linker DNA length distribution (FL(d)) for random (A) or shuffled (B) dinucleosome DNA sequences, using the DHMM-kernel smoothing method. (A) Random dinucleosome sequences simulated based on the produ

NIAID Data Ecosystem40

H3/CENP-A octasomes and the steered MD of 6o1d

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