Single-cell whole genome sequencing data from three mouse (C57BL/6) lymphocytes
收藏NIAID Data Ecosystem2026-05-02 收录
下载链接：
https://figshare.com/articles/dataset/Single-cell_whole_genome_sequencing_data_from_three_mouse_C57BL_6_lymphocytes/28369088
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资源简介：
Single-cell whole genome sequencing data from three selected mouse (C57BL/6) lymphocytes from Rohrback et al. 2018 PNAS paper 'Submegabase copy number variations arise during cerebral cortical neurogenesis as revealed by single-cell whole-genome sequencing'. This dataset is solely for the purpose of testing installation in HiScanner (https://github.com/parklab/HiScanner/), a single cell copy number detection method. If you want to access the full dataset and/or use it for other purposes, please cite the original paper and check SRA regulation.
This dataset contains the following:
bams/
├── SRR6204878_sra.bai
├── SRR6204878_sra.bam
├── SRR6204878_sra.bam.md5
├── SRR6204923_sra.bai
├── SRR6204923_sra.bam
├── SRR6204923_sra.bam.md5
├── SRR6204925_sra.bai
├── SRR6204925_sra.bam
└── SRR6204925_sra.bam.md5
(aligned to GRCm38/mm10 genome)
scan2_out/├── gatk
│ ├── hc_raw.mmq60.vcf.gz
│ └── hc_raw.mmq60.vcf.gz.tbi
└── shapeit
├── phased_hets.vcf.gz
└── phased_hets.vcf.gz.tbi
(Simulated hetSNP and phasing information; required input for HiScanner)
mappability/100mer.chr*.txt (matched mappability tracks required by HiScanner)
创建时间：
2025-02-07
