Single-cell whole genome sequencing data from three mouse (C57BL/6) lymphocytes

Single-cell whole genome sequencing data from three selected mouse (C57BL/6) lymphocytes from Rohrback et al. 2018 PNAS paper 'Submegabase copy number variations arise during cerebral cortical neurogenesis as revealed by single-cell whole-genome sequencing'. This dataset is solely for the purpose of testing installation in HiScanner (https://github.com/parklab/HiScanner/), a single cell copy number detection method. If you want to access the full dataset and/or use it for other purposes, please cite the original paper and check SRA regulation. This dataset contains the following: bams/ ├── SRR6204878_sra.bai ├── SRR6204878_sra.bam ├── SRR6204878_sra.bam.md5 ├── SRR6204923_sra.bai ├── SRR6204923_sra.bam ├── SRR6204923_sra.bam.md5 ├── SRR6204925_sra.bai ├── SRR6204925_sra.bam └── SRR6204925_sra.bam.md5 (aligned to GRCm38/mm10 genome) scan2_out/├── gatk │ ├── hc_raw.mmq60.vcf.gz │ └── hc_raw.mmq60.vcf.gz.tbi └── shapeit ├── phased_hets.vcf.gz └── phased_hets.vcf.gz.tbi (Simulated hetSNP and phasing information; required input for HiScanner) mappability/100mer.chr*.txt (matched mappability tracks required by HiScanner)