A collection of genomic and transcriptomic resources for Rhodnius kissing bugs, vectors of Chagas disease

Genome Assemblies of Rhodnius Species This Zenodo repository contains the primary genome assemblies generated in this study for multiple Rhodnius species. Assemblies were generated using MaSuRCA, and represent draft genomes suitable for downstream genomic analyses. Contents All files are provided as gzipped FASTA files (.fasta.gz). Species Assembly file name Sex Biosample accession number long read(PacBio/ONT) short read(Illumina) R. brethesi primary.genome_RBAM.scf.fasta.gz M SAMN54734933 PacBio (7x)SRR36945516 53xSRR36945517 R. colombiensis primary.genome_COLM.scf.fasta.gz M SAMN54734934 PacBio (7x)SRR36945497 49xSRR36945505 R. domesticus primary.genome_DOMFM.scf.fasta.gz M+F SAMN54734936 ONT (18x)SRR36945493 40xSRR36945494 R. milesi primary.genome_RMM.scf.fasta.gz M SAMN54735064 ONT (15x)SRR36945491 56xSRR36945492 R. montenegrensis primary.genome_R8F.scf.fasta.gz F SAMN54734937 PacBio (7x)SRR36945514 18x (Filée et al. 2022)SRR6749989 R. nasutus primary.genome_R7WU.scf.fasta.gz F SAMN54734938 PacBio (7x)SRR36945512 16x (Filée et al. 2022)SRR6749990 R. neglectus primary.genome_R5WU.scf.fasta.gz F SAMN54734939 PacBio (7x)SRR36945510 23x (Filée et al. 2022)SRR6749979 R. neivai primary.genome_NEIF_rm_conta.fasta.gz F SAMN54735065 ONT (17x)SRR36945508 72xSRR36945509 R. pallescens primary.genome_PALM.scf.fasta.gz M SAMN54734940 PacBio (7x)SRR36945506 64xSRR36945507 R. pictipes primary.genome_PICM.scf.fasta.gz M SAMN54734941 PacBio (7x)SRR36945503 79xSRR36945504 Usage Notes These assemblies are draft genomes; users should apply their own quality control and filtering if necessary. Corresponding raw sequencing data (ONT or PacBio long reads and Illumina WGS) are deposited at NCBI under BioProject PRJNA1405103. Supplementary Table: Accession numbers for the comprehensive dataset associated with the article Sample description Sequencing technology and depth (x) Draft genomes available in this repository Hi-C assembly Species Sex Biosample accession number RNA long read(PacBio/ONT) short read(Illumina) R. brethesi M SAMN54734933 Illumina 50M SRR36983270 PacBio (7x)SRR36945516 53xSRR36945517 primary.genome_RBAM.scf.fasta.gz - R. colombiensis M SAMN54734934 Illumina 50MSRR36983275 PacBio (7x)SRR36945497 49xSRR36945505 primary.genome_COLM.scf.fasta.gz - R. coreodes M SAMN54734935 - ONT (24x)SRR36945495 74xSRR36945496 - JBTXIK000000000 R. domesticus M+F SAMN54734936 - ONT (18x) SRR36945493 40xSRR36945494 primary.genome_DOMFM.scf.fasta.gz - R. milesi M SAMN54735064 - ONT (15x) SRR36945491 56xSRR36945492 primary.genome_RMM.scf.fasta.gz - R. montenegrensis F SAMN54734937 Illumina 50MSRR36983273 PacBio (7x) SRR36945514 18x (Filée et al. 2022)SRR6749989 primary.genome_R8F.scf.fasta.gz R. nasutus F SAMN54734938 Illumina 50M SRR36983269 PacBio (7x) SRR36945512 16x (Filée et al. 2022)SRR6749990 primary.genome_R7WU.scf.fasta.gz R. neglectus F SAMN54734939 Illumina 50M SRR36983274 PacBio (7x) SRR36945510 23x (Filée et al. 2022)SRR6749979 primary.genome_R5WU.scf.fasta.gz - R. neivai F SAMN54735065 - ONT (17x) SRR36945508 72x SRR36945509 primary.genome_NEIF_rm_conta.fasta.gz - R. pallescens M SAMN54734940 Illumina 50M SRR36983272 PacBio (7x) SRR36945506 64x SRR36945507 primary.genome_PALM.scf.fasta.gz - R. pictipes M SAMN54734941 Illumina 50M SRR36983271 PacBio (7x) SRR36945503 79xSRR36945504 primary.genome_PICM.scf.fasta.gz - R. prolixus F SAMN54734942 Marchant et al. 2021ERR1315262 ERR1315260 ERR1315264 ERR1331764 PacBio (7x)SRR36945500 82xSRR36945502 SRR36945501 - JBTXIJ000000000 R. robustus M SAMN54734943 Marchant et al. 2021ERR1315266 ERR1315270 ERR1315272 ERR1315274 ERR1315268 ONT (17x) SRR36945498 46xSRR36945499 - JBTXII000000000 Citation Please cite the associated publication when using these assemblies (statut: submitted).