Genome annotation of Macquarie perch

Intermediate and final files generated from the repeat masking and protein coding gene prediction of the Macquarie perch genome (NCBI Bioproject: PRJNA516983) Repeat_Annotation.tar.gz: RepeatMasker and RepeatModeler output - contains de novo repeat library , repeat-masked (soft-masked) genome and repeat annotation in gff3 format. BUSCO_Genome.tar.gz: BUSCO completeness (actinopterygii_odb9) calculation based on whole-genome sequence (-m genome). BUSCO_Protein.tar.gz: BUSCO completeness (actinopterygii_odb9) calculation based on predicted proteins (-m prot) MP.gff3: BRAKER2 annotation in gff3 format MP.gtf: BRAKER2 annotation in gtf format MP.codingseq.fna: BRAKER2 coding sequence output (DNA sequences) MP.faa: BRAKER2 translated coding sequence output (protein sequences) MP_nointernalstop.faa: Filtered BRAKER2 translated coding sequence (no sequences with internal stop codon)