Capture-recapture data

Data description

The capture-recapture data used in Cayuela et al. (2018, J. Appl. Ecol) were collected in a spatially structured population of Bombina variegata in France, over an 9-years period (2000-2008). Several capture sessions were performed per year (detailed in Supplementary material S1 of the paper). The individuals are in raws and the capture occasion on column (labelled “H:”). The column “S:” specifies the end of the capture history. The column labeled “$COV:sex” is the sex coded as a group effect (1 = male, 2 = female).

The capture-recapture histories are coded with the following events. For an individual captured at t and t–1, we attributed a code of 1 if it had not dispersed and occupied a patch destroyed at t+1 or a code of 4 if the patch was still available; we attributed a code of 2 if an individual had dispersed and occupied a patch destroyed at t+1 or a code of 5 if the patch was still available. For an individual not captured at t–1 but captured at t, a code of 3 or 6 was attributed respectively if it occurred in a patch destroyed at t+1 or not. An individual was coded 0 if it was not captured at t.

The txt file is compatible with E-SURGE program.
Code to enter in the GEMACO in E-SURGE program to run the most general model.
For Initial State: IS - Step 1 - (1): to
For Transition: Survival - Step 1 - (5): from(1:6, 7:12).t(6 10 14 19 20 23 26).g+[t(6 10 14 19 20 23 26)+t(1 2 3 4 5 7 8 9 11 12 13 15 16 17 18 21 22 24 25 27 28)]
For Transition: Dispersal - Step 2 - (5): from(1:3, 4:6).t(1 2 3 4 5 7 8 9 11 12 13 15 16 17 18 21 22 24 25 27 28, 6 10 14 19 20 23 26)+g
For Transition: Site dynamics - Step 3 - (8): t(1 2 3 4 5 7 8 9 11 12 13 15 16 17 18 21 22 24 25 27 28, 6, 10, 14, 19, 20, 23, 26)
For Transition: Recapture - Step 4 - (11): from(1:6, 7:12)+t(1 2 3 4 5 6, 7 8 9 10, 11 12 13 14, 15 16 17 18, 19, 20, 21 22 23, 24 25 26, 27 28 29)+g
For Event: Events - Step 1 - (0): firste+nexte