CryptoCEN data v1.0.0

Data for
MJ O'Meara, JR Rapala, CB Nichols, C Alexandre, B Billmyre, JL Steenwyk, A Alspaugh, TR O'MearaCryptoCEN: A Co-Expression Network for Cryptococcus neoformans reveals novel proteins involved in DNA damage repairCode available at https://github.com/maomlab/CalCEN/tree/master/vignettes/CryptoCENh99_transcript_annotations.tsv
Cryptococcus neoforman H99 (NCBI Taxon:235443) annotated protein features collected from FungiDB Release 49top_coexp_hits.tsv
top 50 CrypoCEN associations for each genetop_coexp_hits_0.05.tsv
top CrypoCEN associations for each gene filtered by score > 0.95 and at most 50 per geneData/estimated_expression_meta.tsv
Metadata for RNAseq estimated expression runsData/estimated_expression.tsv
gene by RNA-seq run estimated expressionData/sac_complex_interactions.tsv
C. neoformans genes that are orthologous to S. cerevisiae genes who's proteins are involved in a protein complexNetworks/CryptoCEN_network.tsv
Co-expression networkNetworks/BlastP_network.tsv
Protein sequence similarity networkNetwork/CoEvo_network.tsv
Co-evolution network