Code for processing and analyzing proteome turnover data generated via dSILO
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<b>Code to calculate half-lives from MaxQuant output files, filter data, and generate figures</b>Includes:R code for generating half-lives and heatmaps using PSM values from a MaxQuant-derived evidence.txt file (<i>related to Figure 2, Figure 3, and SF1</i>)<br>Python scripts to filter data by RSQ and PSM counts (<i>related to Figure 2G, Figure 3</i>)<br>Python scripts to assign proteins to complexes via CORUM, perform KS testing, plot distributions, and map half-lives onto a cryo-EM structure of the respirasome (<i>related to Figure 4 and SF4</i>)<br><br>and all associated input/output files.<br>
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Ross, Alison创建时间：
2024-03-20
