ON-rep-seq

Despite the massive developments within culture-independent methods for detection and quantification of microorganisms during the last decade culture-based methods remain a cornerstone in microbiology. We have developed a new method for bacterial DNA enrichment and tagmentation allowing fast (99%) consensus reads. Whereas, the information from high quality reads is used to retrieve species level taxonomy, comparison of flowgrams allows for strain level differentiation. With benchmarked 288 isolates identified on a single flow cell and a theoretical throughput to evaluate about 1,200 isolates, our method allows for detailed bacterial identification for less than 2$ per sample at very high speed.