RUS-refDB

RUS-refDB is a
collection of protein sequences from rumen associated microorganisms, and the
main purpose was to utilize it as a database for a rumen metaproteomic dataset.
This comprises MAGs from metagenome recovered from rumen-incubated switchgrass
enrichments (Hess et al. doi:10.1126/science.1200387 and Parks et al.
doi: 10.1038/s41564-017-0012-7). We further included 11 genomes from GeneBank
and the Hungate1000 project: Bacillus licheniformis
strain, Butyrivibrio fibrisolvens, Prevotella ruminicola (2
strains), P. brevis, P. bryantii strain, Ruminococcus albus
strain, R. flavefaciens (4 strains), Fibrobacter
succinogenes and Methanobrevibacter
ruminantium and the genomes of the five cultivated anaerobic fungi
available at the time (~2018); Anaeromyces
robustus, Neocallimastix californiae
G1, Orpinomyces sp., Piromyces sp. E2 and Piromyces finnis, downloaded from MycoCosm (https://mycocosm.jgi.doe.gov). Viral scaffolds were also included in the
database.