SNPs identified in A. vaga individuals L1-L11

This dataset includes SNPs detected among 11 <i>A. vaga</i> individuals L1-L11 (SNP dataset I). SNPs were called with SAMtools/BCFtools (v.1.4.1) from alignments of HiSeq reads to the L1 haploid sub-assembly. File 'A.vaga.L1_L11.SNP.dataset.I.raw.vcf' contains raw variant calls (raw INDEL entries are also present). Filtered SNPs (stringent SNP dataset I) are contained in the file 'A.vaga.L1_L11.SNP.dataset.I.filtered.vcf'. Data are in the VCF format.