遇见数据集

<i>B. nonstop</i> annotated proteins

收藏
DataCite Commons2023-10-02 更新2024-08-18 收录
官方服务:

资源简介:

Protein sequences from <i>B. nonstop</i> were additionally annotated by blastp searches (with a cut-off <i>e</i>-value of 10<sup>-20</sup>) against protein datasets of a selection of kinetoplastids available from TriTrypDB (release 62) including <i>Angomonas deanei</i>, <i>Blechomonas ayalai</i>, <i>Bodo saltans</i>, <i>Crithidia fasciculata</i>, <i>Endotrypanum monterogeii</i>, <i>Leishmania major</i> Friedlin, <i>Leishmania martiniquensis</i>, <i>Leishmania mexicana</i>, <i>Leptomonas pyrrhocoris</i>, <i>Leptomonas seymouri</i>, <i>Paratrypanosoma confusum</i>, <i>Porcisia hertigi</i>, <i>Trypanosoma brucei</i> TREU927, <i>Trypanosoma cruzi</i> CL Brener Esmeraldo-like. Proteins not retrieving any hit were then screened (with a cut-off <i>e</i>-value of 10<sup>-5</sup>) against the Swiss-Prot database (downloaded February 10<sup>th</sup>, 2023) (Bairoch &amp; Apweiler 2000, Nucleic Acids Res). Protein domains were further annotated using InterProScan v5.55-88.0 (Jones <i>et al.</i> 2014, Bioinformatics) and the Pfam database (Finn et al. 2014, Nucleic Acid Res).

针对<i>B. nonstop</i>的蛋白质序列,本研究以期望值(e-value)阈值10<sup>-20</sup>为标准,通过BLASTp比对(blastp)进行额外注释,比对所用的数据集来自TriTrypDB(版本62)中收录的多款动基体目原生动物的蛋白质组,所涉物种包括<i>Angomonas deanei</i>、<i>Blechomonas ayalai</i>、<i>Bodo saltans</i>、<i>Crithidia fasciculata</i>、<i>Endotrypanum monterogeii</i>、<i>Leishmania major</i> Friedlin、<i>Leishmania martiniquensis</i>、<i>Leishmania mexicana</i>、<i>Leptomonas pyrrhocoris</i>、<i>Leptomonas seymouri</i>、<i>Paratrypanosoma confusum</i>、<i>Porcisia hertigi</i>、<i>Trypanosoma brucei</i> TREU927 及<i>Trypanosoma cruzi</i> CL Brener Esmeraldo-like。对于未检索到任何有效比对结果的蛋白质序列,本研究再以期望值阈值10<sup>-5</sup>为筛选标准,将其与2023年2月10日下载的Swiss-Prot数据库(Bairoch与Apweiler, 2000年, *Nucleic Acids Res*)进行比对筛选;此外,还通过InterProScan v5.55-88.0(Jones等, 2014年, *Bioinformatics*)与Pfam数据库(Finn等, 2014年, *Nucleic Acids Res*)对蛋白质结构域进行了进一步注释。

提供机构:
figshare
创建时间:
2023-08-31
搜集汇总
数据集介绍
<i>B. nonstop</i> annotated proteins 数据集图片
以上内容由遇见数据集搜集并总结生成
二维码
社区交流群
二维码
科研交流群
商业服务