Additional file 1 of Multi-omics data elucidate parasite-host-microbiota interactions and resistance to Haemonchus contortus in sheep

Additional file 1: Table S1. edgeR analysis of differential gene expression in the abomasum between H. contortus-susceptible and H. contortus-resistant Morada Nova sheep. Table S2. DESeq2 analysis of differential gene expression in the abomasum between H. contortus-susceptible and H. contortus-resistant Morada Nova sheep. Table S3. DESeq2 analysis of differential transcript expression in the abomasum between H. contortus-susceptible and H. contortus-resistant Morada Nova sheep. Table S4. Ballgown analysis of differential transcript expression in the abomasum between H. contortus-susceptible and H. contortus-resistant Morada Nova sheep. Table S5. Annotation and impact of homozygous SNPs between resistant and susceptible Morada Nova sheep detected after case-control variant calling of RNA-seq data. Table S6. Genes located in the +/- 1 Mbp window of each significant SNP by GWAS for EPG in Morada Nova sheep. Table S11. DESeq2 analysis of differential gene expression in H. contortus recovered from resistant and susceptible Morada Nova sheep. Table S12. edgeR analysis of differential gene expression in H. contortus recovered from resistant and susceptible Morada Nova sheep. Table S13. DESeq2 analysis of differential transcript expression in H. contortus recovered from resistant and susceptible Morada Nova sheep. Table S14. Ballgown analysis of differential transcript expression in H. contortus recovered from resistant and susceptible Morada Nova sheep. Table S15. Genes expressed in H. contortus recovered from resistant and susceptible Morada Nova sheep. Table S16. Gene-level features and ASV modules associated with resistance to H. contortus. Table S17. ASV taxonomy of gene co-expression modules from sheep feces and rumen content associated with resistance to H. contortus. Table S18. Gene-level relevant pathways and ASV modules in H. contortus-resistant and H. contortus-susceptible Morada Nova sheep. Table S19. Transcript-level features and ASV modules associated with resistance to H. contortus. Table S20. Transcript functional co-expression modules and ASVs associated with resistance to H. contortus. Table S21. Transcript-level relevant pathways and ASV modules in H. contortus-resistant and H. contortus-susceptible Morada Nova sheep.