Orthologous Gene Group processing and summary statistics

--orthoMCL_ENS.html: R script that (1) generate a data frame for each species with raw reads and read per million (RPMs) for genes assigned to an OGG, and (2) identify the number of genes that overlap within a clade and the number of OGGs that overlap between clades.

--MaxFinder_ParalogTests.html: R script that finds the gene with the largest log2fold change for each clade (positive or negative)using the normalized RPM, filters the name of that gene and generates a data frame with OrthoGroup, MaxLFC, and raw counts for these representative genes/OGGs for each species. In addition, it generates paralog numbers and expression concordance summary statistics and related plots for each clade.

--OGGmeans_variance_CladeComparisons.html: R script that calculates and compares overall patterns of relative expression of OGGs in monogamous and non-monogamous species across clades.