Supplementary files for article "Use of Genome Scale Metabolic Reconstructions of Avian Pathogenic<i>Escherichia coli</i>(APEC) phylotypes for the identification of lineage-specific metabolic pathways" by Long H, Mehat JW, Wu H, van Vliet AHM, La Ragione RM

These are supplementary files for the following submitted manuscript:<b>Huijun Long, Jai W. Mehat, HuiHai Wu, Arnoud H. M. van Vliet and Roberto M. La Ragione.</b> Use of Genome Scale Metabolic Reconstructions of Avian Pathogenic <i>Escherichia coli</i> (APEC) phylotypes for the identification of lineage-specific metabolic pathways.The following files are included in this record:1) Pan genome scale model for APEC.<br>- APEC GEM.sfba2) Genome scale models for APEC phylogroups A, B1, B2, C and G.<br>- APEC_GEM_SubModel_A.sfba- APEC_GEM_SubModel_B1.sfba<br>- APEC_GEM_SubModel_B2.sfba<br>- APEC_GEM_SubModel_C.sfba<br>- APEC_GEM_SubModel_G.sfba3) Genome scale models for APEC phylogroups B2, C and G used to test the effects of 3-hydroxylphenoylacetic acid (3-HPAA) on growth.<br>- SubModel_B2_3-HPAA.sfba- SubModel_C_3-HPAA.sfba<br>- SubModel_G_3-HPAA.sfba4) media script files (pfile) for Carbon, Sulphate and Phosphate input.<br>- media_biolog_c.pfile- media_biolog_p.pfile<br>- media_biolog_s.pfile5) media script files (pfile) for the Genome scale models for APEC phylogroups B2, C and G.<br>- media_SubModels.pfile6) media script files (pfile) for single gene knockout (<i>potE</i> and <i>lysA</i>).<br>- KO_lysA.pfile- KO_potE.pfile