Additional file 9 of Automated Isoform Diversity Detector (AIDD): a pipeline for investigating transcriptome diversity of RNA-seq data

Additional file 9. Table 8: Excitome_freq_matrix .csv. Computationally predicted ADAR editing sites found in Psychiatric Disorders study and confirmed with PCR (Zhu et al. 2012) were combined with editing sites from RADAR database that were previously compared in Alzheimer's disease (Khermesh et al., 2016) to create a list containing 151 editing sites located in 91 genes. If a specific editing site is found in the dbSNP database, a reference number (rs) is included, along with the genomic location, strand orientation, annotation containing details about type of amino acid substitution, amino acid position, codon position on the mRNA, and two columns showing minimum cutoff value for expression and editing read depth for determining accuracy of variant calling.