Data for reproducing results from the manuscript "Vitamin B5 supports Myc oncogenic metabolism and tumour progression in breast cancer"

DATA_for_Kreuzaler_etal_Scripts contains input processed data files for the mass spectrometry imaging data used in the manuscript "Vitamin B5 supports Myc oncogenic metabolism and tumour progression in breast cancer".

The input files are arranged according to different studies and are provided as HDF5 formatted binary files (*.h5). Individual files consist of processed datacubes as a matrix with rows corresponding to pixels and columns corresponding to m/z features. It also includes dimension of the total image as height x width and a list of m/z.

For each study, tissue labels are provided as R data file (*.rds). It consists of tumour-type labels as a matrix pixel matched with the processed datacube.

Additionally following datasets are also available: 

Immunohistochemistry (IHC) data for PDX and human biopsy samples.

Raw GC-MS data for WM Tumours