File S1 - Virus versus Host Plant MicroRNAs: Who Determines the Outcome of the Interaction?

Contains the files: Table S1: Forward and stem loop RT primers used in the detection of virus miRNAs from ACMV and EACMV-UG. Table S2: Forward and stem loop RT primers used in the detection of plant miRNAs. Table S3: Distinction and classification of real and pseudo miRNA precursors of 14 (9 ACMV and 5 EACMV-UG) hairpin sequences using MiPred. Table S4: Predicted putative targets of miRs/miRs* from ACMV and EACMV-UG in Jatropha ESTs using RNAhybrid. Table S5: Predicted putative targets of miRs/miRs* from ACMV and EACMV-UG in Jatropha ESTs using psRNATarget. Table S6: Predicted putative targets of miRs/miRs* from ACMV and EACMV-UG in cassava ESTs using RNAhybrid. Table S7: Predicted putative targets of miRs/miRs* from ACMV and EACMV-UG in cassava ESTs using psRNATarget. Table S8: Plant miRs/miRs* from the miRBase sequence DataBase, release 18, with putative targets in DNA-A of ACMV [Genbank: JN053423, JN053421] and EACMV-UG [Genbank: JN053454, JN053447] using RNAhybrid. Table S9: Plant miRs/miRs* from the miRBase sequence DataBase, release 18, with putative targets in DNA-A of ACMV [Genbank: JN053423, JN053421] and EACMV-UG [Genbank: JN053454, JN053447] using psRNATarget. Table S10: Predicted putative target location of plant miRs/miRs* in Jatropha ESTs using psRNATarget. Table S11: Predicted putative target location of plant miRs/miRs* in cassava ESTs using psRNATarget. Table S12: Summary of results for ACMV and EACMV-UG virus miRNA detection from cassava and Jatropha plant samples. Table S13: Summary of results for plant miRNA detection using on cassava and Jatropha plant samples. (PDF)