An Integrated Approach to Reconstructing Genome-scale Transcriptional Regulatory Networks

This fileset contains the code and sample datasets to run the workflow described in "An Integrated Approach to Reconstructing Genome-scale Transcriptional Regulatory Networks" by Saheed Imam, Daniel R. Noguera and Timothy J. Donohue (Plos Comp bio). The workflow enables the reconstruction of TRNs using comparative genomics and gene expression analyses. The files provided here include example data for E. coli to facilitate the use of the workflow for any organsim of interest. This fileset also contains just the code without any associated datasets (Integrate_v1.0_clean.zip)