Processed datasets used in Almet et al. (2024), "Inferring pattern-driving intercellular flows from single-cell and spatial transcriptomics"

These are the processed anndata objects used in Almet et al. (2024), "Inferring pattern-driving intercellular flows from single-cell and spatial transcriptomics". These datasets are stored as .h5ad files and are intended to be used with the Scanpy package in Python. They contain all relevant cell type annotation, unnormalized and transformed gene expression counts, as well as the inferred intercellular fow networks inferred by FlowSig.