Additional file 1 of Genome-wide survey of tandem repeats by nanopore sequencing shows that disease-associated repeats are more polymorphic in the general population

Additional file 1. Table S1. Data sets used in this study.Detection rates are the number of tandem repeats whose length is predicted from at least one DNA read. *3,312,291 loci. Table S2. Comparison of tantan and TRF annotated tandem repeatsNumber of intersections are counted using bedtools ( https://bedtools.readthedocs.io/en/latest/ ). Each repeat unit was counted separately. Table S3. Phased repeat length and near-by SNPs.SNP genotype on the short and long alleles were shown in each dataset. Repeat copy number changes on both alleles were genotyped using tandem-genotypes. (A) ATXN3 repeat and (B, C) GLS repeat. SNP rs numbers are from dbSNP ( https://www.ncbi.nlm.nih.gov/snp/ ). Table S4. Polymorphic tandem repeat and near-by GWAS signals.Highly polymorphic exonic triplet repeats (IQR ≥ 5) with near GWAS signals (< 100bp). GWAS signals were from a GWAS catalog [22].