Datasets - Unveiling Host-Parasite Relationships through Conserved MITEs in Prokaryote and Viral Genomes

Title:

Unveiling Host-Parasite Relationships through Conserved MITEs in Prokaryote and Viral Genomes

Authors:

Francisco Nadal-Molero(1), Riccardo Roselli(1), Silvia Garcia-Juan(1), Alicia Campos-Lopez(1), Ana-Belen Martin-Cuadrado(1*)

SUPPLEMENTARY FILES

Supplementary File S1. Sequences of cMITEs detected in Bacteria genomes (fasta format). The hosting microbial species and inferred NCBI-taxonomy are indicated in the name of each sequence. The structure of the MITE name is: “Accession|Genome|start|end|TSD|TIRlength|MITETracker_group|Lineage”.

Supplementary File S2. Sequences of cMITEs detected in the Archaea genomes (fasta format). The hosting microbial species and inferred NCBI-taxonomy are indicated in the name of each sequence. The structure of the MITE name is: “Accession|Genome|start|end|TSD|TIRlength|MITETracker_group|Lineage”.

Supplementary File S3. Sequences of vMITEs detected in the virus sequences from the NCBI and IMG/VR v.4.1 database (fasta format). Virus, microbial host (if known) and inferred NCBI-taxonomy is stated in the name of each sequence. The structure of the MITE name is:

“Accession|Genome|start|end|TSD|TIRlength|MITETracker_group|Virus|Name|Host”.

Supplementary File S4. Sequences of si-vMITEs detected in the virus sequences from the NCBI and IMG/VR v.4.1 database (fasta format). Virus, microbial host (if known) and inferred NCBI-taxonomy are stated in the name of each sequence. The structure of the MITE name is: “Accession|Genome|start|end|Ident.Method.by.DB|Host”.

Supplementary Files S5. Cytoscape networks. (A) Figure 1A, (B) Figure 1B.

Supplementary File S6. Sequences of cMITEs obtained from 5837 genomes of Neisseriales. The structure of the MITE name is:

“Accession|NucleotideID|start|end|TSD|TIRlength|MITETracker_group|Genome|Lineage”.

Supplementary File S7. Sequences of si-vMITEs obtained from 5837 genomes of Neisseriales. The structure of the MITE name is: “Accession|Genome|start|end|Host”.

Supplementary File S8. Sequences of cMITEs obtained from 46051 genomes of Bacteroidota. The structure of the MITE name is:

“Accession|NucleotideID|start|end|TSD|TIRlength|MITETracker_group|Genome|Lineage”.

Supplementary File S9. Sequences of si-vMITEs obtained from 46051 genomes of Bacteroidota. The structure of the MITE name is: “Accession|Genome|start|end|Host”.