Files for synteny analysis of T6SS Gene clusters from Ralstonia wilt pathogens.

The .Zip compressed archives contain the loci for Vgr-linked Toxin/Antitoxin gene clusters from 94 Ralstonia solanacearum species complex strains. There is one .Zip per phylotype (I-IV). When the .Zip file is uncompressed, you will find subfolders. Each subfolder corresponds to one RSSC genome. Folders are named by "phylotype-strainName". For example, "IIC-K60" contains the loci from phylotype IIC strain K60. Within each subfolder, files are systematically named. For example, "aux2_I-SL3822_CJO88_RS12855.gbk" means: * aux2 is the systematic name of the auxiliary cluster * I-SL3822 is the phylotype-Strain * CJO88_RS12855 is the RefSeq gene locus tag for the Vgr in the cluster. (Occasionally, clusters lack a Vgr allele. In this case, the gene locus is given for a gene in the cluster). These files contain the aux locus AND the genomic context. There are also "*_only.gbk" files (where * stands for the beginning of the file name). These are REFERENCE files for each aux cluster. Running these with Clinker is helpful for color-coding the aux clusters in the resulting HTML file.