biVI supporting data
收藏资源简介:
Simulated datasets analyzed to benchmark <em>biVI </em>and 10X dataset analyzed to illustrate <em>biVI</em>'s ability to infer biophysical parameters. 10X dataset: allen_B08_raw.loom: 10x count matrices (post kallisto alignment) for Allen sample B08 10X metadata: cluster.membership.csv: cluster membership of all unique cell barcodes cluster.annotation.csv: annotation of clusters Simulated datasets: bursty_20ct_many.loom: count matrices simulated from bursty model of transcription const_20ct_many.loom: count matrices simulated from constitutive model of transcription extrinsic_20ct_many.loom: count matrices simulated from the extrinsic model of transcription bursty_20ct_many_params.npy: gene- cell-type- specific parameters used to generate bursty simulated data const_20ct_many_params.npy: gene- cell-type- specific parameters used to generate constitutive simulated data extrinsic_20ct_many_params.npy: gene- cell-type- specific parameters used to generate extrinsic simulated data



