QuasiFlow: Supplementary File 2 (PDF)

This PDF contains complementary data related to:: · <i>Table S1:</i> Evaluation of TYLCV-Mld genetic variation.· <i>Table S2:</i> Nucleotide changes detected in the mtDNA samples used to validate QuasiFlow analyses.· <i>Table S3:</i> mtDNA variants detected that have a known relation with a human disease.· <i>Table S4:</i> ANOVA test for the 47 samples considering the different factors evaluating genetic variation provided by QuasiFlow· <i>Figure S1:</i> Plot of the number of SNPs detected depending on the number of nucleotides analysed. Nine MiSeq datasets (yellow lines; ranging from 115 to 335 million reads) and three HiSeq dataset (blue lines, ranging from 500 to 501.5 million reads) were used. Every dataset was randomly subset in bulks of 50 000 read folds and plotted against the number of SNPs detected in it by Varscan2.