Genotype data of 1970 Pedunculate oak trees (Quercus robur L.) in 13 European countries at 381 gene loci covering the nuclear and organelle genome
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https://datadryad.org/dataset/doi:10.5061/dryad.8931zcrrd
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资源简介:
The data set is the result of genetic inventory on 1970 Pedunculate oak
trees from 197 locations in Europe. The samples are from the countries:
Belarus, Bosnia, Bulgaria, Croatia, Finland, France, Germany, Hungary,
Italy, Latvia, Poland, Russia and Ukraine. At each location ten individual
trees were collected. The data set includes the location ID and geographic
coordinates of each sampled tree (longitude and latitude in decimal
degrees) and the genotype data. All samples were screened with a targeted
sequencing approach on a set of 381 polymorphic loci (356 nuclear SNPs, 3
nuclear InDels, 17 chloroplast SNPs and five mitochondrial SNPs). The
genotype of each individual is one row in the csv-file “genotypes”. The
genotypes at the nuclear markers are diploid and represented by two
columns per gene marker. The genetic information at the organelle genome
is haploid. For each of these gene markers one column is used. Genotypes
are coded by Arabic numbers. The meaning of the numbers is explained in
the table “coding genotypes” in a second csv-file.
提供机构:
Dryad
创建时间:
2021-10-27



