Functional annotation for 15 diverse arthropod genomes

We present the annotation results of 15 arthropod proteomes using an open source, open access and containerized pipeline for genome-scale functional annotation of insect proteomes and apply it to a diverse range of arthropod species. You can find more information about the pipeline at our readthedocs site. The files for each genome include GOanna, InterproScan and KOBAS predictions.
Arthropod genomes selected for this study and their assembly and annotation statistics.

Apis Mellifera (honey bee)
Drosophila melanogaster (fruit fly)
Tribolium castaneum (red flour beetle)
Latrodectus hesperus (Western black widow spider)
Limnephilus lunatus (caddisfly)
Oncopeltus fasciatus (Large milkweed bug)
Homalodisca vitripennis (Glassy-winged sharpshooter)
Eurytemora affinis (calanoid copepod)
Agrilus planipennis (emerald ash borer)
Copidosoma floridanum (parasitoid wasp)
Athalia rosae (turnip sawfly)
Ceratitis capitata (Mediterranean fruit fly)
Cimex lectularius (Cimicidae bed bug)
Varroa destructor(parasitic mite)

Diaphorina citri (Asian citrus psyllid)
Resources in this dataset:Resource Title: Cimex lectularius (Cimicidae bed bug) annotation. File Name: CLEC.tar.gzResource Description: Functional annotation for Clec-OGSv1.2 protein setResource Title: Tribolium castaneum (red flour beetle) annotation. File Name: TCAS.tar.gzResource Description: Functional annotation for TCAS_OGS_v3 protein setResource Title: Drosophila melanogaster (fruit fly) annotation. File Name: DMEL.tar.gzResource Description: Functional annotation for DMEL_r6.38 protein set

Resource Title: Varroa destructor (parasitic mite) annotation. File Name: VDES.tar.gzResource Description: Functional annotation for NCBI Varroa destructor Annotation Release 100 protein set based on Vdes_3.0 genome (GCA_002443255.1)
Resource Title: Oncopeltus fasciatus (Large milkweed bug) annotation. File Name: ONCFAS.tar.gzResource Description: Functional annotation for oncfas_OGSv1.2 protein setResource Title: Apis Mellifera (honey bee) annotation. File Name: AMEL.tar.gzResource Description: Functional annotation for OGSv3.3 protein set from Amel_4.5 genome (GCA_000002195.1)
Resource Title: Homalodisca vitripennis (Glassy-winged sharpshooter) annotation. File Name: HVIT.tar.gzResource Description: Functional annotation for HVIT-BCM_version_0.5.3 protein set based on Hvit_1.0 genome (GCA_000696855.1)
Resource Title: Limnephilus lunatus (caddisfly) annotation. File Name: LLUN.tar.gzResource Description: Functional annotation for LLUN-BCM_version_0.5.3 protein set from Llun_1.0 genome (GCA_000648945.1)
Resource Title: Latrodectus hesperus (Western black widow spider) annotation. File Name: LHES.tar.gzResource Description: Functional annotation for LHES-BCM_version_0.5.3 protein set from Lhes_1.0 genome (GCA_000697925.1)
Resource Title: Eurytemora affinis (calanoid copepod) annotation. File Name: EAFF.tar.gzResource Description: Functional annotation for EAFF-BCM_version_0.5.3 protein set from Eaff_1.0 genome (GCA_000591075.1)
Resource Title: Copidosoma floridanum (parasitoid wasp) annotation. File Name: CFLO.tar.gzResource Description: Functional annotation for CFLO-BCM_version_0.5.3 protein set based on Cflo_1.0 genome (GCA_000648655.1)
Resource Title: Ceratitis capitata (Mediterranean fruit fly) annotation. File Name: CCAP.tar.gzResource Description: Functional annotation for Ccap-OGSv1 protein set based on Ccap_1.1 assembly (GCA_000347755.2)
Resource Title: Athalia rosae (turnip sawfly) annotation. File Name: AROS.tar.gzResource Description: Functional annotation for AROS-BCM_version_0.5.3 protein set based on Aros_1.0 genome (GCA_000344095.1)Resource Title: Agrilus planipennis (emerald ash borer) annotation. File Name: APLA.tar.gzResource Description: Functional annotation for APLA-BCM_version_0.5.3 protein set based on Apla_1.0 genome (GCA_000699045.1)

本报告呈现了利用开源、开放获取及容器化的基因组规模昆虫蛋白质组功能注释流程对15种节肢动物蛋白质组进行注释的结果，并应用于种类繁多的节肢动物物种。关于该流程的更多信息，可在本团队所维护的readthedocs网站查阅。各基因组文件包含GOanna、InterproScan及KOBAS预测结果。本研究选定的节肢动物基因组及其组装与注释统计数据如下：

- Apis Mellifera（蜜蜂）
- Drosophila melanogaster（果蝇）
- Tribolium castaneum（红蚁）
- Latrodectus hesperus（西部黑寡妇蜘蛛）
- Limnephilus lunatus（樗蚕）
- Oncopeltus fasciatus（大奶草叶甲）
- Homalodisca vitripennis（玻璃翅叶蝉）
- Eurytemora affinis（桡足类copepod）
- Agrilus planipennis（美国白蛾）
- Copidosoma floridanum（寄生蜂）
- Athalia rosae（萝卜叶蜂）
- Ceratitis capitata（地中海实蝇）
- Cimex lectularius（床虱）
- Varroa destructor（寄生螨）
- Diaphorina citri（亚洲柑橘蚜虫）

本数据集包含以下资源：

资源标题：Cimex lectularius（床虱）注释。文件名：CLEC.tar.gz
资源描述：针对Clec-OGSv1.2蛋白质集的功能注释。

资源标题：Tribolium castaneum（红蚁）注释。文件名：TCAS.tar.gz
资源描述：针对TCAS_OGS_v3蛋白质集的功能注释。

资源标题：Drosophila melanogaster（果蝇）注释。文件名：DMEL.tar.gz
资源描述：针对DMEL_r6.38蛋白质集的功能注释。

资源标题：Varroa destructor（寄生螨）注释。文件名：VDES.tar.gz
资源描述：基于Vdes_3.0基因组（GCA_002443255.1）的NCBI Varroa destructor 注释发布100蛋白质集的功能注释。

资源标题：Oncopeltus fasciatus（大奶草叶甲）注释。文件名：ONCFAS.tar.gz
资源描述：针对oncfas_OGSv1.2蛋白质集的功能注释。

资源标题：Apis Mellifera（蜜蜂）注释。文件名：AMEL.tar.gz
资源描述：来自Amel_4.5基因组（GCA_000002195.1）的OGSv3.3蛋白质集的功能注释。

资源标题：Homalodisca vitripennis（玻璃翅叶蝉）注释。文件名：HVIT.tar.gz
资源描述：基于Hvit_1.0基因组（GCA_000696855.1）的HVIT-BCM_version_0.5.3蛋白质集的功能注释。

资源标题：Limnephilus lunatus（樗蚕）注释。文件名：LLUN.tar.gz
资源描述：来自Llun_1.0基因组（GCA_000648945.1）的LLUN-BCM_version_0.5.3蛋白质集的功能注释。

资源标题：Latrodectus hesperus（西部黑寡妇蜘蛛）注释。文件名：LHES.tar.gz
资源描述：来自Lhes_1.0基因组（GCA_000697925.1）的LHES-BCM_version_0.5.3蛋白质集的功能注释。

资源标题：Eurytemora affinis（桡足类copepod）注释。文件名：EAFF.tar.gz
资源描述：来自Eaff_1.0基因组（GCA_000591075.1）的EAFF-BCM_version_0.5.3蛋白质集的功能注释。

资源标题：Copidosoma floridanum（寄生蜂）注释。文件名：CFLO.tar.gz
资源描述：基于Cflo_1.0基因组（GCA_000648655.1）的CFLO-BCM_version_0.5.3蛋白质集的功能注释。

资源标题：Ceratitis capitata（地中海实蝇）注释。文件名：CCAP.tar.gz
资源描述：基于Ccap_1.1组装（GCA_000347755.2）的Ccap-OGSv1蛋白质集的功能注释。

资源标题：Athalia rosae（萝卜叶蜂）注释。文件名：AROS.tar.gz
资源描述：基于Aros_1.0基因组（GCA_000344095.1）的AROS-BCM_version_0.5.3蛋白质集的功能注释。

资源标题：Agrilus planipennis（美国白蛾）注释。文件名：APLA.tar.gz
资源描述：基于Apla_1.0基因组（GCA_000699045.1）的APLA-BCM_version_0.5.3蛋白质集的功能注释。