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Comparative metagenomic NGS anaysis of endophytic microbiome of rice

NIAID Data Ecosystem2026-03-13 收录

稻米微生物组

基因组比较分析

数据链接：

https://www.ncbi.nlm.nih.gov/sra/SRP286615 数据链接链接失效反馈

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资源简介：

Investigations on leaf endophytic microbiome of aromatic and non-aromatic rice genotypes grown in three geogrpahical locations in India

应用场景：

创建时间：

2022-01-01

水稻基因组

基因组比较分析

The genomic positions relative to the Nipponbare genome of overlapping contigs of the indica and japonica dispensable genomes. Genomic positions were determined using an integration approach based on

DataCite Commons2024-12-13 更新60

Additional file 3 of Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem

产甲烷微生物群落

基因组比较分析

Additional file 3. Average nucleotide identity between MAGs in this study and genomes in NCBI database (hit with 85% similarity).

Figshare2020-02-15 更新50

Pairwise comparisons of LVF3 against type strain genomes from TYGS (Meier-Kolthoff and Göker, 2019).

基因组比较分析

细菌分类学

Reference: Meier-Kolthoff JP, Göker M. TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy. Nat Commun. 2019;10:2182. (XLSX)

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Additional file 2 of Global genome analysis of the shikimic acid pathway reveals greater gene loss in host-associated than in free-living bacteria

代谢途径

基因组比较分析

Additional file 2:Distribution of genes encoding enzymes of the shikimic acid pathway in host-associated Bacteria. (XLS 571 KB)

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biofilm metagenome Genome sequencing. biofilm metagenome

考古遗址微生物群落

基因组比较分析

To compare epilithic microbial communities on limestones between Maya Ruins

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