Homo sapiens breed:iPS Transcriptome or Gene expression

Down syndrome (DS), caused by the trisomy of chromosome 21, is one of the common chromosomal disorders, of which the main clinical manifestations are delayed nervous development and intellectual disability. Long non-coding RNAs (lncRNAs) play critical roles in various biological processes, including cell growth, cell cycle regulation and differentiation. The roles of abnormally expressed lncRNAs have been previously reported; however, the biological functions and regulatory patterns of lncRNAs in DS remain poorly understood. The aim of the present study was to perform a whole-genome-wide identification of lncRNAs and mRNAs. In addition, global expression profiling analysis of DS-induced pluripotent stem cells (iPSCs) was performed, and differentially expressed (DE) lncRNAs and mRNAs were screened. Furthermore, the target genes and functions of DE lncRNAs were predicted using Gene Ontology (GO) annotation and Kyoto Encyclopedia of Genes and Genomes (KEGG) signaling pathway enrichment analysis. The results revealed that the majority of the lncRNAs exerted functions in DS via cis-acting target genes. In addition, the enrichment analysis results indicated that these target genes were mainly involved in nervous and muscle development in DS. In conclusion, this integrative analysis using lncRNA and mRNA profiling provided novel insights into the understanding of the pathogenesis of DS, and it may promote the diagnosis and development of novel therapeutics for this disease.