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RIP-seq reveals the interactome of nucleolin in activated CD4+ T cells

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NIAID Data Ecosystem2026-05-02 收录
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https://www.ncbi.nlm.nih.gov/sra/SRP501297
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During the actiation of CD4+T cells, the pri-miRNAs translocated from cytoplasma into nucleus.However, the mechanism remains unkown. We found that pri-miR-31 interact with nucleolin through G-guadruplex struction in pri-miR-31. We then transfected ASO to destribute the interaction of nucleolin and G4 struction. In order to identify the interacting RNA, including miRNA precuser and mRNA, we performed the RIP-seq Immunoprecipited by anti-nucleolin and IgG. Overall design: Naïve CD4+ T cells derived from wild type C57 mice were activated by anti-CD3/28. Cells were lysated and Immunoprecipitated by antinucleolin and IgG. Paired reads were mapping to mm10 gemonic.
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2025-04-11
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