Evidence for ancient selective sweeps followed by differentiation among three species of Sphyrapicus sapsuckers

<b>Abstract</b><br/><p>Scripts and metadata associated with publication Evidence for ancient selective sweeps followed by differentiation among three species of <em>Sphyrapicus</em> sapsuckers. Scripts detail the steps taken to process, align, and QC raw WGS reads, calculate differentiation statistics, and generate figures (maps, PCAs, Manhattan plots, scatter plots, phylogenetic trees, Genotype x Individual plots). Metadata for samples used in the analyses includes sample IDs, museum voucher IDs (where applicable), species, collection date and location, and sample sex. </p>