Table containing the study origin and download links for all primary tissue and organoid scRNA-seq data sets.

The batch variable column details the meta-data used in determining batch. The Author described protocol column contains protocol descriptions as utilized in each data set’s original publication and the Protocol classification/region column contains protocol descriptions as we classify them in this study. We also provide the age, condition, and cell-line annotations when made available for all studies, as well as various technical and quality control-related factors for all data sets. (XLSX)