Over-represented 8-mer motifs in CNEs of cluster #3 genes.

Human-fugu CNEs of cluster #3 human transcription factor-encoding genes were compared against CNEs of non-cluster #3 transcription factor-encoding genes. Number of instances of each motif was determined by searching each motif in the human-fugu CNEs permitting at most 2 mismatches. P-values were calculated based on a chi-squared test followed by Bonferroni correction for multiple testing. Underlined portion of TFBS sequence indicates similarity with motif. TF, transcription factor; TFBS, TF binding sites.