Additional file 9: of Transcript profiling for early stages during embryo development in Scots pine

Differentially expressed transcripts (FC > 2; RPKM > 10) between consecutive developmental stages during embryo development. Only DETs with positive matches against TAIR database have been included. Transcript name (Transcript ID), fold-change (FC), expression values at each embryo developmental stage (RPKM) and the best match against TAIR database (At locus ID, At name, At annotation) are shown. GO enrichment analysis for the up- or down-regulated transcript list resulting from each pairwise comparison is also presented. For each GO enrichment result is shown the GO term, Onthology, (P = Biological Process, F = Molecular Function, C = Cell Component), Number of GO annotated transcripts belonging to each category among the up- or down-regulated transcript list (Number in input list), Number of total GO annotated transcripts belonging to each category in the seed transcriptome (Number in BG/Ref), p-value and level of enrichment (FDR). (XLSX 35.8 kb)